Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKTISGGENFTTNNRMELRALNEALKILKRPCHITLYSDSQYVCQAINVWLVNWQKKNF-----AKVKNVDLWKEFVKVSKGHSIVAVWIKGHNGHAENERCNSLAKLEAQKRVKTTT
3AA4 Chain:A ((2-141))
LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAVIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDT
General information:
TITO was launched using:
RESULT:
Template:
3AA4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47948 for 1076 contacts (-44.6/contact) +
2D Compatibility (PS) -14385 + (NN) -6742 + (LL) 0
1D Compatibility (HY) -9200 + (ID) 3700
Total energy: -81975.0 ( -76.18 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3AA4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AA4-query.scw
PDB file :
Tito_Scwrl_3AA4.pdb
: