Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKALKILSVGALLFVALNAKDFSKTS-----DEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQL---HEYATKNTDKMTVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHKHDKHGKKHGKKHDKDHDDKDHDHHDEDHSDKH |
4G2R Chain:A ((368-433)) | --------------YIAMNSRSLNATKVFAWPDAEVAVM-GAKAAVGILH-----KKKLAAAPEHEREALHDQLAAEHERIAGGVDSALDIGVVDEKIDPAHTRSKLTEALAQAPARRG----------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4G2R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 9757 for 280 contacts (34.8/contact) +
2D Compatibility (PS) -6114 + (NN) -683 + (LL) 4768
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: 3878.0 ( 13.85 by residue)
QMean score : 0.324
|
|
|