Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTT-SEMVSSHSLVYAFDKTSKMLEKSPLEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFE-KKIPKEIAH---ALNDAPVDYVVVHGRT----------------RSDRYQKDKIDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNTTELPAVVKKDLVLEHFDKMVEFYGDRGVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMRESIEEFFNQEMLQSEVPLWVELNQKSV |
| 3B0U Chain:X ((6-246)) | --------LSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRG--NRERLLAFRPEEHPIALQLAGSDPKSLAEAARIGEAFGY-DEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVT-VKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTF---------VTNGGIRSLEEA--LFHLKRVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRGRPKGRLWRRLLSEGRSLQALDRALRLME------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3B0U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -79520 for 2205 contacts (-36.1/contact) +
2D Compatibility (PS) -29571 + (NN) -2257 + (LL) 3692
1D Compatibility (HY) -11200 + (ID) 3650
Total energy: -122506.0 ( -55.56 by residue)
QMean score : 0.281
|
|
|