Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQAKIKNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIRSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
2A1F Chain:A ((7-227))
-------KRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGM-NRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDC-------AKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE
General information:
TITO was launched using:
RESULT:
Template:
2A1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174309 for 1732 contacts (-100.6/contact) +
2D Compatibility (PS) -23812 + (NN) -10398 + (LL) 816
1D Compatibility (HY) -24800 + (ID) 5400
Total energy: -237903.0 ( -137.36 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2A1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A1F-query.scw
PDB file :
Tito_Scwrl_2A1F.pdb
: