Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRLEVSNQAKLPTQFGEFCIQCFREKGSNGSKDHLVIFTPNFPQNPLVRLHSECLTGDALGSQKCDCGGALQMALERISKEGGLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEMIGFKDDERDYSIAGEILEYYRIKKMRLLTNNPLKIAALEKYAEVTRESLIVCANEHNQGYLEVKKLKMGHLL
4RL4 Chain:B ((21-192))
MKRLEVSNQAKLPTQFGEFYIQCFREKGSNGSKDHLVVFTPNFSQNPLVRLHSECLTGDALGSQKCDCGGALQMALERISKEGGLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEMIGF-DDERDYSVAGEILEYYRIKKMRLLTNNPKKIAALEKYAEVTRESLIVC--------------------
General information:
TITO was launched using:
RESULT:
Template:
4RL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91777 for 1270 contacts (-72.3/contact) +
2D Compatibility (PS) -18894 + (NN) -7600 + (LL) 1508
1D Compatibility (HY) -24000 + (ID) 8300
Total energy: -149063.0 ( -117.37 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4RL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RL4-query.scw
PDB file :
Tito_Scwrl_4RL4.pdb
: