Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-EGVREAIAKLDNTDFMGRTIRVTEANPKKS
2DNZ Chain:A ((229-302))
-SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV--------
General information:
TITO was launched using:
RESULT:
Template:
2DNZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49699 for 488 contacts (-101.8/contact) +
2D Compatibility (PS) -7729 + (NN) -2184 + (LL) 388
1D Compatibility (HY) -6800 + (ID) 1250
Total energy: -67274.0 ( -137.86 by residue)
QMean score : 0.809
(partial model without unconserved sides chains):
PDB file :
Tito_2DNZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DNZ-query.scw
PDB file :
Tito_Scwrl_2DNZ.pdb
: