Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQTGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKK--------LADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSAEINPVLKTL---KPHLSIEAAIKEALQQLRS
2ZTD Chain:A ((17-208))
MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVG-------------AVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
2ZTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118980 for 1184 contacts (-100.5/contact) +
2D Compatibility (PS) -18187 + (NN) -2736 + (LL) 960
1D Compatibility (HY) -8000 + (ID) 2900
Total energy: -149843.0 ( -126.56 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTD-query.scw
PDB file :
Tito_Scwrl_2ZTD.pdb
: