Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVITGASSGIGLECVLMLLN---QGYKVYALSR---------HATLCVALNHALCECVDIDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNW-EKTAFENDERKDSVYALEVNAAKSFYS------GVYQKAL-NAKEVAQKIVFLSMSHKIKARYLIGLKTQLLLALYQILPSSWYDSLFRLVVLGRKRDA
1FDU Chain:A ((6-265))
--LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT--EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLG----VLDRT---DIHTFHRFYQYLALSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFT---TERFLPLLRMRLDDPSGSNYVTAMHREVFG-
General information:
TITO was launched using:
RESULT:
Template:
1FDU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171349 for 1887 contacts (-90.8/contact) +
2D Compatibility (PS) -24818 + (NN) -10286 + (LL) 1268
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -225835.0 ( -119.68 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1FDU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDU-query.scw
PDB file :
Tito_Scwrl_1FDU.pdb
: