Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKE----PYPARATFQVAKLPKDALVEIEAIAIK
3VCZ Chain:A ((26-152))
-TKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVP-ADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVR
General information:
TITO was launched using:
RESULT:
Template:
3VCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43867 for 954 contacts (-46.0/contact) +
2D Compatibility (PS) -13132 + (NN) -2054 + (LL) 36
1D Compatibility (HY) -13200 + (ID) 2850
Total energy: -75067.0 ( -78.69 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3VCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VCZ-query.scw
PDB file :
Tito_Scwrl_3VCZ.pdb
: