Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNLAEAIKLHKLNQVLAHVSLKVKKEVVLEILEKITPTKACSILKPVMEVVLKNNRLDMLELVAEELSF-DSKRTLEATLLVPQKLENNELEEVQQKLQARFN-APVEIAQDTW-SKKGVSLSVSSLDLEIGFSKEDILKKIEKQVIQSI
2HC5 Chain:A ((4-80))
---------------------------------------------------------------------------------------ERLTTLQPVWDRYDTQIHNQKDNDNEVPVHQVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTE
General information:
TITO was launched using:
RESULT:
Template:
2HC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12161 for 327 contacts (-37.2/contact) +
2D Compatibility (PS) -7772 + (NN) -3110 + (LL) 8772
1D Compatibility (HY) -2000 + (ID) 400
Total energy: -16671.0 ( -50.98 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_2HC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HC5-query.scw
PDB file :
Tito_Scwrl_2HC5.pdb
: