Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG-KVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
1AD2 Chain:A ((5-227))
------KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS-----
General information:
TITO was launched using:
RESULT:
Template:
1AD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115166 for 1726 contacts (-66.7/contact) +
2D Compatibility (PS) -24199 + (NN) -13397 + (LL) 1420
1D Compatibility (HY) -17600 + (ID) 5450
Total energy: -174392.0 ( -101.04 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1AD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AD2-query.scw
PDB file :
Tito_Scwrl_1AD2.pdb
: