Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLDSLALASSKQEIEKLKEIFIATSEYEYQFWDMAYQS
2GM7 Chain:A ((11-220))
--VTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSGLSA-----EELWPYFKEASLYELEFWQAAYEG
General information:
TITO was launched using:
RESULT:
Template:
2GM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148320 for 1679 contacts (-88.3/contact) +
2D Compatibility (PS) -22158 + (NN) -4642 + (LL) 792
1D Compatibility (HY) -12400 + (ID) 3050
Total energy: -189778.0 ( -113.03 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2GM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GM7-query.scw
PDB file :
Tito_Scwrl_2GM7.pdb
: