Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLSSNDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKER-DYLEEKIITLENKFKDMGHYAASDEVNEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW |
1UPH Chain:A ((54-128)) | ------------------------------------------------------SEGCRQILGQLQ-PSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEE----QNKSKKKAQQAAADTGNNSQVSQNY------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UPH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16971 for 416 contacts (40.8/contact) +
2D Compatibility (PS) -7670 + (NN) 31 + (LL) 8356
1D Compatibility (HY) -1200 + (ID) 1400
Total energy: 15088.0 ( 36.27 by residue)
QMean score : 0.261
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