Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTHVFEVYPKVNVFLKIL-HKEGAYHKIISRMCLVKNKLKDIISVKNALSFSLK----GDFDCPLEENSL-FKALQVLKKFLVQKNFSHSVIKSLDTLAIEVEKNIPTQAGLGGGSADAGGLLYHLNQMFDWRLSLKELYTMGSLVGADTNFFISQYKSANATSYGEVIENFEEESLEDRLEIYAPNHVFCSTKAVYQAYKPETCFFQAKEWLKKTSLECLKTYDRNELNDLLKPALRTNPALKDIESQLSKEWFFSGSGSAFFRLKNTQKGANETHCQQ |
3PYD Chain:A ((8-157)) | ----VRVPGKVNLYLAVGDRREDGYHELTTVFHAVS--LVDEVTVRNADVLSLELVGEGADQLPTDERNLAWQAAELMAEH---------VGRAPD-VSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLGSDVPFAL-HGGTALGTGRGEELATVLSRNTFHWVLAFADSGLLTSAVYNELDRLREVGDPPRLGEPGPVLAALAAGDPDQLAPLLGNEMQAAAVSLDPALARALRAGVEAGALAGIVSGSGPTCAFLCTSASS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80614 for 1106 contacts (-72.9/contact) +
2D Compatibility (PS) -15250 + (NN) -3116 + (LL) 1096
1D Compatibility (HY) -8400 + (ID) 2200
Total energy: -108484.0 ( -98.09 by residue)
QMean score : 0.360
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