Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQNPIEIKAKTLEEALIQASIALNCPIINLQYEVIQMPSKGFLNIGKKEAIILVGVKESVKEVKEESVKEIHQNAEEKQSLGIKTPQEEIITPKPPKKTPKEESHNGDKLHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPAYGYSIHLEISTFLQNQEKVMEAQLQSTIMTVHEVGKGQMKAPDGVLTYIALKKLR------KAF-PNKYVSIKTNLNDEKYIVINDFNNE |
2CPM Chain:A ((46-121)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VEFRKRMEKEVSDFIQDSGQIKKKFQ--PMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRRG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3225 for 366 contacts (-8.8/contact) +
2D Compatibility (PS) -7308 + (NN) -2242 + (LL) 13428
1D Compatibility (HY) 800 + (ID) 400
Total energy: 1053.0 ( 2.88 by residue)
QMean score : 0.354
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