Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDYIIAAHGRYAQEVKDSCQMITGQTTNISAITFTEEMGVTDVLDAYMAVYSPVNETA---IIVDIVGGTPCNAAQMFSTKHPEVKVVSGLSLGLIIPLSLGESLEEAMLGAKDNIQFVEQKASHTIVSDDGEEED
1VSQ Chain:A ((5-98))
---VIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLV---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83446 for 615 contacts (-135.7/contact) +
2D Compatibility (PS) -9967 + (NN) -2393 + (LL) 2500
1D Compatibility (HY) -7600 + (ID) 1100
Total energy: -102006.0 ( -165.86 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1VSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VSQ-query.scw
PDB file :
Tito_Scwrl_1VSQ.pdb
: