Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNYNILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIP------MVVSFIKSKMDKKSAE
4CLC Chain:A ((2-170))
-----------VVLDKKLLERLTSRKV-----PLEELEDMEKRCFLSTFTYQDAFDLGTYIRNAVKENFPEKPVAIDISLP---NGHCLFRTVTYGGSA---------LDNDFWIQRKKKTALRFGHSSFYMGCKKGDKTPEEKFFVDSK--------EYAFHG---------------GAVLIQSERSD-YPYACLTISGLKQEEDHLMALSSLIAFANE----
General information:
TITO was launched using:
RESULT:
Template:
4CLC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133049 for 1276 contacts (-104.3/contact) +
2D Compatibility (PS) -17414 + (NN) -8085 + (LL) 5708
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -155340.0 ( -121.74 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_4CLC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CLC-query.scw
PDB file :
Tito_Scwrl_4CLC.pdb
: