Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVN-RTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF
3EIV Chain:A ((7-106))
----ITVVGNLVDDPELRFTPSGAAVAKFRVASTP--------DGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRLKQRS--------RTVYELDVDEV------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3EIV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51237 for 544 contacts (-94.2/contact) +
2D Compatibility (PS) -8683 + (NN) -1620 + (LL) -756
1D Compatibility (HY) -4800 + (ID) 1800
Total energy: -68896.0 ( -126.65 by residue)
QMean score : 0.687
(partial model without unconserved sides chains):
PDB file :
Tito_3EIV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EIV-query.scw
PDB file :
Tito_Scwrl_3EIV.pdb
: