Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VDNNFQDRTPPQNIEAEQAVLGAIFLEPNALITASEILMPDDFYRTGHQIIFETMLDL-NDHGKAVDVLTVYEALAAKGNLEDAGGLPYLTELSGAVPTAANLEYYAHIIEDKALLRRLIRTATQIATDGYSREDELDMLMDEAEKSILEVSQRKNVGAFKNIKDVLVKTYDDIEILHNRKGD---ITGIPTGFNELDKMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMGAEQLVMRMLCAEGNINAQNLRTGALTSDDWQKLTIAMGTLSNSGIYIDDTPGVRVNEIRSKCRRLKQETGLGMIVIDYLQLIAGSGRGGENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYREDYYDRE--GENDGTIEIIIAKQRNGPVGDVKLAFVKEYNKFVNLEVRYDDAMA |
| 4NMN Chain:A ((2-433)) | ----------PCDESAERAVLGSMLEDPENIPLVLEYLKEEDFCIDEHKLLFRVLTNLWSEYGNKLDFVLIKDHLE-KKNLLQ---IDWLEELYEEAVSPDTLEEVCKIVKQRSAQRAIIQLGIELIHKGKENKD-FHTLIEEAQSRIFSIAES--STQFYHVKDV---AEEVIELIYKFKSSDRLVTGLPSGFTELDLKTTGFHPGDLIILAARPGMGKTAFMLSIIYNLAKDEGKPSAVFSLEMSKEQLVMRLLSMMSEVPLFKIRSGSISNEDLKKLEASAIELAKYDIYLDDTPALTTTDLRIRARKLRKEKEVEFVAVDYLQLLRPPVRKS-PRQEEVAEVSRNLKALAKELRIPVMALAQLSREVEKRSDKRPQLADLRESGQIEQDADLILFLHRPEYYTKKPN--EQGIAEVIIAKQRQGPTDIVKLAFIKEYTKFANLE-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195101 for 3082 contacts (-63.3/contact) +
2D Compatibility (PS) -46404 + (NN) -25657 + (LL) 1372
1D Compatibility (HY) -35600 + (ID) 8650
Total energy: -310040.0 ( -100.60 by residue)
QMean score : 0.450
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