Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALM---PLFGIRVK
2BM5 Chain:A ((20-167))
------------------------------------------EDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCT---------------FERTTLWHSTFAQCSMLGSVFVACR-----LRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVD----PVLWRTASLVGARV-
General information:
TITO was launched using:
RESULT:
Template:
2BM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182411 for 1236 contacts (-147.6/contact) +
2D Compatibility (PS) -14729 + (NN) 3589 + (LL) 4564
1D Compatibility (HY) -5200 + (ID) 2200
Total energy: -196387.0 ( -158.89 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_2BM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BM5-query.scw
PDB file :
Tito_Scwrl_2BM5.pdb
: