Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVLNNEQETLQFQKGNTLYRSWNSDQLIAKNDKEDTRNEIMESTILYLNKEALMFTKSVPVIDTNGVSSKLKGRQVYQQTNSSYKYKNSEIVENSIVKLANRQYYLNADATLYLGGKEIKKVTKPLLLIDKTGSVTIYENKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLASFGGTDNEKIVVKEDEKKEDKKKTAESAKKTASNTSQSENESNQTTKGTGNQLNATKKYGNNLNVGNGTSDSEPNDGKDTKNNGSGSNANGGTNQSGLNEIDDYEAVLRKIEDLNKKLERNIPVLRIGYIAPGVTSVKVSYNYADPNNTLIGVTKISAVDEKTGKTVNTQYVSAVDTEATLKGLSPNGKYHLEFTYQYDLGTNKGIQEVKMQSDSFTTQTVAAIYQMQSVTSTTMKVNIALDAQIDDVKRARIKVTKSDGDFFYMNVSANFLNGNGEILNATGLKPSTAYQFQTVIEMKNGETIELNSSEKYYTMQATVLKNLKASQSVNKVLQVQYDWSSADYTLNQAIIELEDEEDNTEVDYQIVNQEKGNIHLVPDTKSELINLKAKLVLKTTNNNTKESKTFEYPVKQEIEYDKQAKLTMDLTPFQTEENSEAQTEKQDVVAEKETNGNDLTAKMEDVLAPQNATYDMSFSMQRKALETYQLAFERKIAGIDDDNWTMWKSQQVTTDEAGQVKVTETISKLAKDSFDYRVAVYDAQGALQLYVYQK |
3W5M Chain:A ((749-826)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NVSDETPKDVIATAYFAHSADLAARMATELGKDAAPYTDLFTRIRKAFQTAYVASDGKVKGDTQSAYVLTLSMNLVPD--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W5M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 25678 for 509 contacts (50.4/contact) +
2D Compatibility (PS) -8017 + (NN) -1027 + (LL) 42248
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: 56282.0 ( 110.57 by residue)
QMean score : 0.069
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