Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDA-IILKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAAALMEEIKRRFGDTL
2W1T Chain:B ((5-50))
----GIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYS---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2W1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13613 for 189 contacts (-72.0/contact) +
2D Compatibility (PS) -4716 + (NN) 157 + (LL) 3176
1D Compatibility (HY) -6000 + (ID) 1550
Total energy: -22546.0 ( -119.29 by residue)
QMean score : 0.186
(partial model without unconserved sides chains):
PDB file :
Tito_2W1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W1T-query.scw
PDB file :
Tito_Scwrl_2W1T.pdb
: