Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLFDTHVHLNDEAFDDDIEEVIKRAQENDVTRMAVVGFNKETIDRALELAEKYD----FISLIVGWHPTDAITFTDEDLEWLRDLALTHPKVVALGEMGLDYHWDTSPKETQFEVFRKQIRLAKEVNLPIVIHNREATEDVVRILQEEHAEEVGGIMHCFGETVEVMEACLAMNFYISFGGTVT--FKNAKLPKIAAQAIPIDRLLIETDAPYLAPTPNRGK----RNEPGYVKLVAEKIAELKEMKYSEIATHSTENAKRLFRIKD
3RCM Chain:A ((3-248))
-LIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAW-DTDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGN-IPEGRLMLESDAPYLLPRSLRPKPKSGRNEPAFLPEVLREVA--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144629 for 1966 contacts (-73.6/contact) +
2D Compatibility (PS) -25336 + (NN) -18591 + (LL) 2660
1D Compatibility (HY) -14400 + (ID) 4000
Total energy: -204296.0 ( -103.91 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3RCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RCM-query.scw
PDB file :
Tito_Scwrl_3RCM.pdb
: