Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSERSMKRLMKGAAWLTAASLISKILSAIYRVPFQNMVGDVGFYIFQQVYPIYGIAMTLALGGFPVVISKMLAEAEGDVRRQQIIMRAVSRMLRIVSIVIFAFLFLFANLIAIMMGDPALSELIRVISFVFLLMPQLAFMRGFFQGEGDMIPTAISQTVEQIIRVAIILIGAGLALHFNFDLYDAGSMAMSGAFFGGVSGIFILRHFYNKKVRLGEGIQPAVFTNKEEKVGIGRTFLRQSVAICVVSSMLILFQLVDSFQVYRLMSDSGIPDFIAKSLKGVYDRGQPILQLGLVISTGLALALVPMITAARVQGQQKELKRSVLLAIKITLILSGAETIGLIVIMRPLNQMLFQTPDGTFVLQLFMPAVFLSSLIIMLSSILQGFGKIAVPAVGVGIGLIVKWVTGGILIPRLATVGASVSTCVGLLVILLICYVSLKQTIRVPFVEKTMLFRLVAALVLMAVFPCLFEWLAPLDTRLGSAFQAIVSALVGGGIFLVFALRYKLLGPKDFVFLPFGSKLLALSKLVARK |
3TWE Chain:A ((19-24)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLRKKL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TWE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1498 for 14 contacts (-107.0/contact) +
2D Compatibility (PS) -509 + (NN) 1329 + (LL) 47368
1D Compatibility (HY) -400 + (ID) 100
Total energy: 46190.0 ( 3299.29 by residue)
QMean score : -0.066
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