Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADNRCSKVIVVCQEEERKHVKELMSQLNVAEHRIEIVKGGSERQYSVAAGLERCG-TGRVVLVHDGARPFITLDIIDRLLIGVEQSKAAICAVKVKDTVKRV-MNGVVQETVDRENLWQVQTPQAFELPILRKAHQLARKEQFLGTDEASLVERIPCPVAIVQGSYYNIKLTTPEDMPLAKAILGELGGIAND
2YCM Chain:A ((6-225))
----VILLAG---------MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDV---DLSFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTL---TLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE-------
General information:
TITO was launched using:
RESULT:
Template:
2YCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176886 for 1585 contacts (-111.6/contact) +
2D Compatibility (PS) -22395 + (NN) -5369 + (LL) 1100
1D Compatibility (HY) -18800 + (ID) 3550
Total energy: -225900.0 ( -142.52 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2YCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YCM-query.scw
PDB file :
Tito_Scwrl_2YCM.pdb
: