Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL
1NPR Chain:A ((133-248))
----------------------------------------------------------KIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGG---KPVPLKEEEVQNILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI
General information:
TITO was launched using:
RESULT:
Template:
1NPR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31045 for 618 contacts (-50.2/contact) +
2D Compatibility (PS) -12349 + (NN) 256 + (LL) 4164
1D Compatibility (HY) -9600 + (ID) 2550
Total energy: -51124.0 ( -82.72 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_1NPR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NPR-query.scw
PDB file :
Tito_Scwrl_1NPR.pdb
: