Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHA-IWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
2GFH Chain:A ((114-252))
-----------------STRLQH--------MILADDVKAMLTELR----KEVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQ----KEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWIN------KSGRVPLTSSP--MPHYMVSSVLELPALLQSI--
General information:
TITO was launched using:
RESULT:
Template:
2GFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38622 for 988 contacts (-39.1/contact) +
2D Compatibility (PS) -14502 + (NN) -10146 + (LL) 2320
1D Compatibility (HY) -9200 + (ID) 2200
Total energy: -72350.0 ( -73.23 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_2GFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFH-query.scw
PDB file :
Tito_Scwrl_2GFH.pdb
: