Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTIQQLVKHVSVREFKNERLSDETKQHLLTAARSASSSHFVQSFSILEITDEKLRKELAEITNSASYVNQTGTFYVFVGDLYRQSKLLLENNRTLDGLRNMESLLVSVIDATIAAQNMVIAAESLDLGICYIGGI----RNDIGKVAELLNLPPFTIPVFGLTVGVPEYKNQVKPRLLLENQVGENQYPHEQFTDLKAYEELTKDYYALREKNQHQTSWGDKNVEFFEEIRRPEIASFLKKQGFTLD
3KWK Chain:A ((10-175))
-NAALDNIFERKSVRTYLNKGVEKEKIDLMLRAGMSAPSGKDVRPWEFVVVSDRAKLDSMAAALPYAKMLTQARNAIIVCGDSARS--------------------FYWYLDCSAAAQNILLAAESMGLGAVWTAAYPYEDRMEV--VRKYTHLPENILPLCVIPFGYPATKEQPKQK-YDEKKIHYNQY-----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104408 for 1239 contacts (-84.3/contact) +
2D Compatibility (PS) -17935 + (NN) -9683 + (LL) 5672
1D Compatibility (HY) -12000 + (ID) 2200
Total energy: -140554.0 ( -113.44 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_3KWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KWK-query.scw
PDB file :
Tito_Scwrl_3KWK.pdb
: