Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKLDFSYNNANYNAEFLMKILTTLKDITKVEQFTIEIIDAVPNDQEQFKEEKGLFSKEVFDFNNLVKESHGIKIDFKEITNILKQCRTVWELSMLVVTSENELNDSGKVLCEVELIEGDLFAILYSEDFNIDLFLEKFSTDEITIEG
2RHO Chain:A ((160-241))
-----------------------------------LEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSAL-MGIGIATGENRAAEAAKKAISSPLLE------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RHO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9743 for 389 contacts (-25.0/contact) +
2D Compatibility (PS) -8420 + (NN) -571 + (LL) 5136
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -19698.0 ( -50.64 by residue)
QMean score : 0.185
(partial model without unconserved sides chains):
PDB file :
Tito_2RHO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RHO-query.scw
PDB file :
Tito_Scwrl_2RHO.pdb
: