Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKG-NVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDL-DIEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAASRGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
1UUG Chain:A ((6-220))
---TWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
1UUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106970 for 1644 contacts (-65.1/contact) +
2D Compatibility (PS) -23083 + (NN) -13208 + (LL) 708
1D Compatibility (HY) -22800 + (ID) 5350
Total energy: -170703.0 ( -103.83 by residue)
QMean score : 0.721
(partial model without unconserved sides chains):
PDB file :
Tito_1UUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UUG-query.scw
PDB file :
Tito_Scwrl_1UUG.pdb
: