Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTI-KANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAG-LKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTVTIYPAAINTE-LLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVNVNEFTVGPTSQPW
3PK0 Chain:A ((8-226))
--LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPH--KITVNAIMPGNIMTEGLLE-----NGEEYIASMAR----------SIPAGALGTPEDIG-------------
General information:
TITO was launched using:
RESULT:
Template:
3PK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104477 for 1832 contacts (-57.0/contact) +
2D Compatibility (PS) -23576 + (NN) -9690 + (LL) 1404
1D Compatibility (HY) -15200 + (ID) 3600
Total energy: -155139.0 ( -84.68 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_3PK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PK0-query.scw
PDB file :
Tito_Scwrl_3PK0.pdb
: