Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------MKDKTKKRKWNWAQILAIFVLVTLVVSMVYATVNLITAPSGNVPEGQQTKGDYSLMLMQCVLGVVVLFLPSIISKKMKFVIPNAMYIVFIVFLY-------CAIYLGEVRSFYYLIPNWDTILHTFSGAMLGGLGFSIVSLLNNDERITLSMSPVFVALFACSFAVFLGVFWEFYEFAADSFGMNM---QKTMLEDGTMLQGHAAVADT-----------MGDLFVDFLGAFVIS----IIGYFSIRKNKKWMK----------------NFEFKKVDEEVK-------------- |
| 4Q3O Chain:A ((31-347)) | EVPIPQSISAEFKAALAQYPTPSVEEARSFVPTTAAQWRDYVQATNKMQKTKIKNMRKHYGVTVELLDIKGVTVRKIT-PKSLSPEFKDH------VYIDIHGGAYVLF-AGLPSIEEGILIAHRLGIVVYSVDYRMPPAYPFPAALDDVKHVYRVLSQQYDANHIFMGGTSAGGGLLLAFVQGLIENGVATPR-----------AIYAGTPWADLTKTGDSLYTNEGIDRILITYDGTLGASARLYAGNTPLTHPKLSPIYGD-FTDFPPTFLVTGTRDMFLSDTVRVNRKMRDAGVTTVLDVYEGLSHADYLVSHQTPESQSVYRQLKRFLVGFT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q3O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190031 for 1779 contacts (-106.8/contact) +
2D Compatibility (PS) -23018 + (NN) 1139 + (LL) 1684
1D Compatibility (HY) -4800 + (ID) 2350
Total energy: -217376.0 ( -122.19 by residue)
QMean score : ?
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