Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEKTIMERRSIKKANDEPISRETVNTILEQAAYAPFHSKVEPWNVYVLHTLAEKERYIEKIIEFNEREQGVSFSEAEIADLKAGY----AKKIITPPYLLIVTTNIIG-----HGKKDFES-IGATSAFIQNIQLLGWEAGIGMIWRSNRFIF-DAKFADDLGIPAEQKIVGTLHLTSLAEVPEAKP--RRPLNEWVKNLADL
4G8S Chain:A ((27-203))
---EAIRTRRSVRAFSDRPVEPEKLQMVLEAARQAPSWANMQCSRFVVVQDAEVKAKISE-----------LSFVEAFFAPL--GYRTNPAQKALAEAPVVIVACGVPGESGDLRGQQYYMTDVGIAT---ENLMLAAHAVGLGSVFVG---VFGEEQLGDLLDIPPEIRIVGLFPLGYPR-------PARKPLDEIV------
General information:
TITO was launched using:
RESULT:
Template:
4G8S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85672 for 1187 contacts (-72.2/contact) +
2D Compatibility (PS) -16590 + (NN) -4862 + (LL) 2972
1D Compatibility (HY) -11600 + (ID) 2450
Total energy: -118202.0 ( -99.58 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4G8S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G8S-query.scw
PDB file :
Tito_Scwrl_4G8S.pdb
: