Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIAIAADHGGFQLKEKIRAHLIESGYTVKDFGCYSLE-SVDFPEYAAKVGHFVATENSLGVLCCGTGIGMSMAANKIKGVRAAVVSDAFSAMMTRRHNNSNVLCLGERVLGDSLALLLLDTWLVAEFEGGRHNTRLQKLAELEEREEDK
4EM8 Chain:A ((4-143))
-RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREV-SDTSFGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTAQSVLYTFMTTAFLGGRHAVRVQKLGE--------
General information:
TITO was launched using:
RESULT:
Template:
4EM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110445 for 1147 contacts (-96.3/contact) +
2D Compatibility (PS) -15381 + (NN) -9870 + (LL) 1032
1D Compatibility (HY) -12400 + (ID) 3100
Total energy: -150164.0 ( -130.92 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_4EM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EM8-query.scw
PDB file :
Tito_Scwrl_4EM8.pdb
: