Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVVADYLALFAVICIWGLLLINIVLIVAGYVYYLKNEARKVPEIPVEVPFVSVMVPAHNEGK-VIVKTVESLLAFDYPVDRYEIIVINDNSSD-NSAELLAAIQAKNPTRFLKIINTDNITGGKGKSNALNIGFAESRGELVAIYDADNTPERQALRILVGEITNDAKLGAVIGKFRTRNRNASWLTRFINIE-----------------TLSFQW---------MAQAGRWALFKLCTIPGTNFIVRRSLLEEIGGWDVKAV---AEDTEISFRIYMMGYRIKF----QAKAVTWEQEPQTLPVWFKQRSRWAKGNIYVILKNVPLLFKREGRRVRFDILYFLSIYFLLLTSLIVSDVLLVLYALGLVHTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIMLMYVTYCQLWMVVAAYGFFIFLKDTVLKRETKWYKTERF |
| 4D0Z Chain:A ((133-370)) | ---------------------------------------------VDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEK------VRVLRNDRR---EGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAED------------RTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFP--------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4D0Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73927 for 1584 contacts (-46.7/contact) +
2D Compatibility (PS) -21657 + (NN) -4763 + (LL) 20880
1D Compatibility (HY) -13600 + (ID) 2900
Total energy: -95967.0 ( -60.59 by residue)
QMean score : 0.347
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