Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGADELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISLNSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKAVQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNAAHMVEVFEKTKATAALAASIFHYGELSIKNVKTTLLEKGVNIRP
4EWN Chain:D ((2-249))
-LAKRIIACLDVKDGRVVKGTNFENLRDSGDPVELGKFYSEIGIDELVFLDIT------KTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIVAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRVGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEA-FLAGADAALAASVFHFREIDVRELKEYLKKHGVNVR-
General information:
TITO was launched using:
RESULT:
Template:
4EWN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151018 for 2103 contacts (-71.8/contact) +
2D Compatibility (PS) -26716 + (NN) -10239 + (LL) 936
1D Compatibility (HY) -20800 + (ID) 6150
Total energy: -213987.0 ( -101.75 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_4EWN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EWN-query.scw
PDB file :
Tito_Scwrl_4EWN.pdb
: