Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKAVVIENYGGKEELK-EKEVAMPKAG-KNQVIVKEAATSINPIDWKLREGYLKQMMDW------------EFPIILGWDVAGVISEVGEGVTDWKVGDEVFARPETTRFGTYAEYTAVDDHLLAPLPEGISFDEAASIPLAGLTAWQALFDHAKLQ----KGEKVLIHAGAGGVGTLAIQLAKHAGAEVITTASAKNHELLKSLGADQVIDYKEVNFKDVLSDI---DVVFDTMGGQIETDSYDVLKEGTG-RLVSIVG--ISNEDR-AKEKNVTATGI-------------------WLQPNGEQLKELGKLLANKTIKPIVGATFPFSEKGVFDAHALSETHHAVGKIVISFNK |
| 2VN8 Chain:A ((24-373)) | --AWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSK--VPEAFLKVERGHARGKTVIN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VN8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141834 for 2625 contacts (-54.0/contact) +
2D Compatibility (PS) -32401 + (NN) -3191 + (LL) 280
1D Compatibility (HY) -25600 + (ID) 6000
Total energy: -208746.0 ( -79.52 by residue)
QMean score : 0.520
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