Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRSWPDFAAFLLTILTVTWIILTWGLHISDIVPGGEKGIWYKLIPLFLGIISTISVFFVKEKLVKWILLGFNILLLILIYFVYHIGEIGMF
1TM9 Chain:A ((97-108))
---------------------------------------------------------------------------IFCVIYFLYHFG-----
General information:
TITO was launched using:
RESULT:
Template:
1TM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4867 for 38 contacts (-128.1/contact) +
2D Compatibility (PS) -1233 + (NN) -748 + (LL) 7356
1D Compatibility (HY) -4000 + (ID) 300
Total energy: -3792.0 ( -99.79 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1TM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TM9-query.scw
PDB file :
Tito_Scwrl_1TM9.pdb
: