Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGNDHVGIELKPVIVAYLQDLGHEVDDFGAFSNERT-DYPEYGKKVAESVAAGKSDLGILICGSGVGISIAANKVNGIRAVVCSEPYSAKLSREHNNTNILAFGSRVVGAELAKMIVQNWLDAEFEGGRHAKRVEMIARIEDEND
4EM8 Chain:A ((4-141))
-RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS--DTSFGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTAQSVLYTFMTTAFLGGRHAVRVQKL--------
General information:
TITO was launched using:
RESULT:
Template:
4EM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97555 for 1122 contacts (-86.9/contact) +
2D Compatibility (PS) -14936 + (NN) -5582 + (LL) 604
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -133369.0 ( -118.87 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_4EM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EM8-query.scw
PDB file :
Tito_Scwrl_4EM8.pdb
: