Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIRLARIDDRLIHGQVATVWTKETQVERIIVISDDVAKDEVRKTLLTQVAPPGVKASVVDVQKGIRVYNNPKYATTPVMLLFTNPTDVLTLVEAGVNITTVNIGGMAFREGKHMITNAVSVDETDEAAFRKLDEKGIELEIRKVASDNKVKLIPLLDKDK
3P3V Chain:A ((11-135))
------RVDERLIHGQ-GQLWVKFLNCNTVIVANDAVSEDKIQQSLMKTVIPSSIAIRFFSIQKVIDIIHKASPAQS-IFIVVKDLQDAKLLVEGGVPITEINIGNIHKTDDKVAITQFISLGETDKSAIRCL----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3P3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78025 for 925 contacts (-84.4/contact) +
2D Compatibility (PS) -13012 + (NN) -2207 + (LL) 2904
1D Compatibility (HY) -12800 + (ID) 2150
Total energy: -105290.0 ( -113.83 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3P3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P3V-query.scw
PDB file :
Tito_Scwrl_3P3V.pdb
: