Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLFIKASPLPNEVSRSSQVAETFMAEYKAKNPSDTVEELVLYNTEVPLLDLELMTAGRELQAGKAFTDLAPDVQKKLNAYNALTEQFLAADKYVFVFPLWNLGIPPLLKAYIDTFVIAGKSFRYTEHGPEALLKDKKAILIHGSGGIYSAGPTSSFTHGEPYLRTILQFIGINVVPSIFVEGIDHNPSKEAEIVAAAKAVAQESATEF
2D5I Chain:A ((1-192))
-SKVLVLKSSILAG-YSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDA-----PLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVT---PYLSTFLGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKA---------
General information:
TITO was launched using:
RESULT:
Template:
2D5I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114775 for 1460 contacts (-78.6/contact) +
2D Compatibility (PS) -21066 + (NN) -8028 + (LL) 1472
1D Compatibility (HY) -13600 + (ID) 3950
Total energy: -159947.0 ( -109.55 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_2D5I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5I-query.scw
PDB file :
Tito_Scwrl_2D5I.pdb
: