Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIEKISFSLISLAGDSFSKLIEALQAAKESDSELVEQLLKEADDLMIEAHKVQTEMLIQETRGE-QANFSVLLVHAQDTLMNTILASTLIREMIEMHQEIKTLRKEEEK
2WWV Chain:A ((3-103))
-ELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTK-LIEGDAGEGKMKVSLVLVEAQLHLMTSMLARELITELIELHEKLKA-------
General information:
TITO was launched using:
RESULT:
Template:
2WWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42456 for 667 contacts (-63.7/contact) +
2D Compatibility (PS) -11262 + (NN) -9796 + (LL) 1132
1D Compatibility (HY) -8400 + (ID) 1800
Total energy: -72582.0 ( -108.82 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_2WWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WWV-query.scw
PDB file :
Tito_Scwrl_2WWV.pdb
: