Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIVAAITAKIQKAKLPTHVEATRKD-GFEKDSVILLEQIRTIDKQRLTDKITHLDEDLMAKVNKALEVSLGVVEF
4MZM Chain:A ((15-125))
--IRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVEIEKKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNALMISLGL---
General information:
TITO was launched using:
RESULT:
Template:
4MZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64713 for 779 contacts (-83.1/contact) +
2D Compatibility (PS) -12100 + (NN) -5829 + (LL) 812
1D Compatibility (HY) -12800 + (ID) 3700
Total energy: -98330.0 ( -126.23 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_4MZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MZM-query.scw
PDB file :
Tito_Scwrl_4MZM.pdb
: