Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGYYSPQEVTEITIEKGTQKA-------NSSTLTLVLLGFLGGAFISLGYLLYIRAVGTMPHEWGSFATLIGASL-FPVGLVCILLGGGELITGNMMAVAIAWYDKKISFQQLLRNWAIVSVMNLVGAFFVAYFFGHFVGLTEGDFLPKTLA-TAGAKINDPFWVAFVSGIGCNWFVGIAVWLCYAAKDFAGKILGIWFPVMAFVAIGFQHVVANMFIIPAAIFAGYYSWADF---IWNVIPVYLGNVVGGAVFVSL-FYFLAYKKNAPKKVKEEIHQPIEEN
3TDO Chain:A ((8-259))
------------TLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILL-IFTIGGLLTDAGSPMTKIVMGLSFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVG-TGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKIIMIFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK-----------------
General information:
TITO was launched using:
RESULT:
Template:
3TDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -259701 for 2101 contacts (-123.6/contact) +
2D Compatibility (PS) -24554 + (NN) -7952 + (LL) 2112
1D Compatibility (HY) -26000 + (ID) 4050
Total energy: -320145.0 ( -152.38 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_3TDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDO-query.scw
PDB file :
Tito_Scwrl_3TDO.pdb
: