Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIVFFDVDGTLVG-ETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINSYICYNG-QYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMNSIK--REYPK---VDAN-YYKGRDIYQCLLFCDESYDAYYREEFKQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMKDTYAFGDGLNDIAMLQTVGTGVAMGNGRDEVKAVADYVTSHVDDDGVYNALKQLKLI
3R4C Chain:A ((11-268))
MIKVLLLDVDGTLLSFETHKVSQSSIDALKKVHDSGIKIVIATGRAASDLHEI-DAVPYDGVIALNGAECVLRDGSVIRKVAIPAQDFRKSMELAREFDFAVALELNEGVFVN-----RLTPTVEQIAGIVEHPVPPVVDIEEMFERKECCQLCFYFDEEAEQKVMPLLSGLSATRWHPLFADVNVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDNSGLYKALKHFGVI
General information:
TITO was launched using:
RESULT:
Template:
3R4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153931 for 2131 contacts (-72.2/contact) +
2D Compatibility (PS) -27579 + (NN) -16384 + (LL) 28
1D Compatibility (HY) -22000 + (ID) 4100
Total energy: -223966.0 ( -105.10 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3R4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R4C-query.scw
PDB file :
Tito_Scwrl_3R4C.pdb
: