Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD
4IGA Chain:A ((6-115))
-----KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVV------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4IGA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55539 for 911 contacts (-61.0/contact) +
2D Compatibility (PS) -11652 + (NN) -5062 + (LL) 7304
1D Compatibility (HY) -9600 + (ID) 2050
Total energy: -76599.0 ( -84.08 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_4IGA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IGA-query.scw
PDB file :
Tito_Scwrl_4IGA.pdb
: