Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
3LSG Chain:A ((20-103))
------------------------------------------------------------------------------------------------FTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPKQYRE---
General information:
TITO was launched using:
RESULT:
Template:
3LSG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38676 for 541 contacts (-71.5/contact) +
2D Compatibility (PS) -8722 + (NN) -4201 + (LL) 6664
1D Compatibility (HY) -8000 + (ID) 1500
Total energy: -54435.0 ( -100.62 by residue)
QMean score : 0.692
(partial model without unconserved sides chains):
PDB file :
Tito_3LSG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LSG-query.scw
PDB file :
Tito_Scwrl_3LSG.pdb
: