Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYIKNPAKIEEKSFEIIQQIIDDIRPDYTFQNKLEEAIIKRAIHTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCYVSDPETMEIAKQHGITRSMAGIKLASLKDGPKLFVLGNAPTAVYKIIEMVESGQL-QADAVVAVPVGFVGAAECKEEI-LETDIPAIVARGRKGGSNLAAAIINAILITM
4FDV Chain:A ((5-204))
--YEKDGAKIYVQSFATIRAEADLAR--FTPE---EEVVVVRMIHAAGMVGLENHVRFAPGMAIAARAALEAGAPILCDARMVSEGITRARLPAKN-EVICTLQDPRVPALAQEMGNTRSAAALELWRPKLEGAVVAIGNAPTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLGGSAITVAAVNAL----
General information:
TITO was launched using:
RESULT:
Template:
4FDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131391 for 1700 contacts (-77.3/contact) +
2D Compatibility (PS) -21924 + (NN) -10722 + (LL) 768
1D Compatibility (HY) -10000 + (ID) 3100
Total energy: -176369.0 ( -103.75 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_4FDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FDV-query.scw
PDB file :
Tito_Scwrl_4FDV.pdb
: