Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQQINWKKNVSFRSGSPAFTLLETILSITIILSISLLIPLFFQCYNKTIQLSNIDQTTEWQLFLIQTRLELEKATNIQIDGNKLSFSNGKDLITYSKYNDLVRRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP
1OQW Chain:A ((1-28))
------------------FTLIELMIVVAIIGILAAIAIPQYQNYV-------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10865 for 105 contacts (-103.5/contact) +
2D Compatibility (PS) -2967 + (NN) -630 + (LL) 8472
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -8790.0 ( -83.71 by residue)
QMean score : 0.002
(partial model without unconserved sides chains):
PDB file :
Tito_1OQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OQW-query.scw
PDB file :
Tito_Scwrl_1OQW.pdb
: