Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKKNIILISVLLGALLLLTGCSMDPSQNTDGFFSTYLIQPFTSFIMFVAKFVGGNYGIAIIITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQARLKRA--TSKEEQATIQKEMMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIASHTFLWFNLGSPDMVLAIIAGLVYLAQYFVSMIGYSPEQKKQMKIIGLMSPIMILFVSFTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK
3WO6 Chain:A ((8-232))
----------------------------ESEGIWNHFFVYPMSWLITTVANLLNGSYGLSIIIVTILIRLALLPLTLKQQKS----MRAMQVIRPEMEAIQKKYKEKASKDPKVQQEMQKELLGLYQKHGVNPMA-GCLPLFIQLPILMAFYFAIMRTEEIRYHTFLWFDLGQPDYILPFVAGITTYFQFKMTMSH-----QMQMKVMLYVMPVMIIIAGLSLPSALSLYWVIGNIFMIIQTY----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3WO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161447 for 1375 contacts (-117.4/contact) +
2D Compatibility (PS) -22081 + (NN) -9616 + (LL) 6448
1D Compatibility (HY) -30000 + (ID) 4250
Total energy: -220946.0 ( -160.69 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_3WO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WO6-query.scw
PDB file :
Tito_Scwrl_3WO6.pdb
: